Index

A

add_value() (microscopes.mixture.model.state method) almost_eq() (in module microscopes.common.util) assign() (in module microscopes.kernels.gibbs)

assign_resample() (in module microscopes.kernels.gibbs) assignments() (microscopes.irm.model.state method) (microscopes.mixture.model.state method)

B

bind() (in module microscopes.irm.model) (in module microscopes.mixture.model)

C

cluster_hyperprior() (microscopes.mixture.definition.model_definition method)

create_group() (microscopes.mixture.model.state method)

D

dcheck_consistency() (microscopes.mixture.model.state method) default_assign_kernel_config() (in module microscopes.mixture.runner) default_cluster_hp_kernel_config() (in module microscopes.mixture.runner) default_feature_hp_kernel_config() (in module microscopes.mixture.runner) default_grid_feature_hp_kernel_config() (in module microscopes.mixture.runner) default_kernel_config() (in module microscopes.mixture.runner)

delete_group() (microscopes.mixture.model.state method) deserialize() (in module microscopes.irm.model) (in module microscopes.mixture.model) digest() (microscopes.common.recarray.dataview.numpy_dataview method) (microscopes.common.relation.dataview.numpy_dataview method) (microscopes.common.relation.dataview.sparse_2d_dataview method) domain_hyperpriors() (microscopes.irm.definition.model_definition method) domains() (microscopes.irm.definition.model_definition method)

E

empty_groups() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) entity_data_positions() (microscopes.irm.model.state method)

expensive_state (microscopes.mixture.runner.runner attribute) expensive_state_digest() (microscopes.mixture.runner.runner method)

G

get_cluster_hp() (microscopes.mixture.model.state method) get_domain_hp() (microscopes.irm.model.state method) get_feature_dtypes() (microscopes.mixture.model.state method) get_feature_hp() (microscopes.mixture.model.state method) get_feature_types() (microscopes.mixture.model.state method) get_latent() (microscopes.mixture.runner.runner method)

get_latents() (microscopes.kernels.parallel.runner method) get_relation_hp() (microscopes.irm.model.state method) get_suffstats() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) groups() (in module microscopes.common.query) (microscopes.irm.model.state method) (microscopes.mixture.model.state method) groupsize() (microscopes.irm.model.state method) (microscopes.mixture.model.state method)

H

hp() (in module microscopes.kernels.gibbs) (in module microscopes.kernels.slice)

hyperpriors() (microscopes.mixture.definition.model_definition method)

I

initialize() (in module microscopes.irm.model) (in module microscopes.mixture.model) is_group_empty() (microscopes.mixture.model.state method)

isactivegroup() (microscopes.irm.model.state method)

K

KL_approx() (in module microscopes.common.util)

KL_discrete() (in module microscopes.common.util)

M

microscopes.common.query (module) microscopes.common.random (module) microscopes.common.recarray.dataview (module) microscopes.common.relation.dataview (module) microscopes.common.util (module) microscopes.common.validator (module) microscopes.irm.definition (module) microscopes.irm.model (module) microscopes.kernels.gibbs (module) microscopes.kernels.mh (module)

microscopes.kernels.parallel (module) microscopes.kernels.slice (module) microscopes.mixture.definition (module) microscopes.mixture.model (module) microscopes.mixture.query (module) microscopes.mixture.runner (module) mkdirp() (in module microscopes.common.util) model_definition (class in microscopes.irm.definition) (class in microscopes.mixture.definition) models() (microscopes.irm.model.state method) (microscopes.mixture.definition.model_definition method)

N

n() (microscopes.mixture.definition.model_definition method) ndomains() (microscopes.irm.model.state method) nentities() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) next() (microscopes.common.recarray.dataview.numpy_dataview method)

nfeatures() (microscopes.mixture.model.state method) ngroups() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) nrelations() (microscopes.irm.model.state method) numpy_dataview (class in microscopes.common.recarray.dataview) (class in microscopes.common.relation.dataview)

P

perftest() (in module microscopes.kernels.gibbs) posterior_predictive() (in module microscopes.mixture.query)

posterior_predictive_statistic() (in module microscopes.mixture.query)

R

random_assignment_vector() (in module microscopes.common.util) random_orthogonal_matrix() (in module microscopes.common.util) random_orthonormal_matrix() (in module microscopes.common.util) rank() (in module microscopes.common.util) relation_hyperpriors() (microscopes.irm.definition.model_definition method)

relation_models() (microscopes.irm.definition.model_definition method) relations() (microscopes.irm.definition.model_definition method) remove_value() (microscopes.mixture.model.state method) run() (microscopes.kernels.parallel.runner method) (microscopes.mixture.runner.runner method) runner (class in microscopes.kernels.parallel) (class in microscopes.mixture.runner)

S

sample() (in module microscopes.kernels.mh) (in module microscopes.kernels.slice) sample_inverse_wishart() (in module microscopes.common.random) sample_multivariate_normal() (in module microscopes.common.random) sample_normal_inverse_wishart() (in module microscopes.common.random) sample_post_pred() (microscopes.mixture.model.state method) sample_wishart() (in module microscopes.common.random) score_assignment() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) score_data() (microscopes.mixture.model.state method) score_joint() (microscopes.mixture.model.state method) score_likelihood() (microscopes.irm.model.state method) score_value() (microscopes.mixture.model.state method)

serialize() (microscopes.irm.model.state method) (microscopes.mixture.model.state method) set_cluster_hp() (microscopes.mixture.model.state method) set_domain_hp() (microscopes.irm.model.state method) set_feature_hp() (microscopes.mixture.model.state method) set_relation_hp() (microscopes.irm.model.state method) set_suffstats() (microscopes.mixture.model.state method) shape() (microscopes.common.relation.dataview.numpy_dataview method) (microscopes.common.relation.dataview.sparse_2d_dataview method) (microscopes.irm.definition.model_definition method) size() (microscopes.common.recarray.dataview.numpy_dataview method) sparse_2d_dataview (class in microscopes.common.relation.dataview) state (class in microscopes.irm.model) (class in microscopes.mixture.model)

T

theta() (in module microscopes.kernels.slice) toarray() (microscopes.common.relation.dataview.numpy_dataview method) tocoo() (microscopes.common.relation.dataview.sparse_2d_dataview method)

tocsc() (microscopes.common.relation.dataview.sparse_2d_dataview method) tocsr() (microscopes.common.relation.dataview.sparse_2d_dataview method)

V

validate_dict_like() (in module microscopes.common.validator) validate_in_range() (in module microscopes.common.validator) validate_kwargs() (in module microscopes.common.validator) validate_len() (in module microscopes.common.validator) validate_nonempty() (in module microscopes.common.validator)

validate_nonnegative() (in module microscopes.common.validator) validate_not_none() (in module microscopes.common.validator) validate_positive() (in module microscopes.common.validator) validate_type() (in module microscopes.common.validator)

Z

zmatrix() (in module microscopes.common.query) (in module microscopes.mixture.query) zmatrix_heuristic_block_ordering() (in module microscopes.common.query)

zmatrix_reorder() (in module microscopes.common.query)